Contacts page

Don Adjeroh

Lane Department of Computer Science and Electrical Engineering
West Virginia University
Morgantown, WV 26506 USA
E-mail: don@csee.wvu.edu

Papers on our conference
2008: The Virtual Suffix Tree: An Efficient Data Structure for Suffix Trees
 
Julien Allali

LaBRI
University of Bordeaux I
Unité Mixte de Recherche CNRS (UMR 5800)
33405 Talence cedex, France

Papers on our conference
2006: The Gapped-Factor Tree
2009: Validation and Decomposition of Partially Occluded Images with Holes
 
Amihood Amir

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: amir@cs.biu.ac.il

Papers on our conference
2004: Theoretical Issues of Searching Aerial Photographs: A Bird's Eye View
2005: Asynchronous Pattern Matching - Metrics
 
Kazuaki Ando

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan
E-mail: Ando@is.tokushima-u.ac.jp

Papers on our conference
1996: An Efficient Multi-Attribute Pattern Matching Machine
1998: A Fast Morphological Analysis Using the Extended AC Machine for Oriental Languages
 
Gabriela Andrejková

Department of Computer Science, College of Science,
P.J. Safarik University
Jesenna 5
041 54 Kosice
Slovakia
E-mail: andrejk@kosice.upjs.sk
WWW: kosice.upjs.sk/~kmi/Andrejko/homein.htm

Papers on our conference
1998: The Longest Restricted Common Subsequence Problem
1999: The Closest Common Subsequence Problems
2000: The Set-Set Closest Common Subsequence Problem
 
Pavlos Antoniou

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: pavlos.antoniou@kcl.ac.uk
WWW: www.dcs.kcl.ac.uk/pg/pavlosan/

Papers on our conference
2008: Conservative String Covering of Indeterminate Strings
2009: Validation and Decomposition of Partially Occluded Images with Holes
 
Jan Anto¹


Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: antosj@fel.cvut.cz
WWW: cs.felk.cvut.cz/webis/en/people/antosj.html

Papers on our conference
2005: Backward Pattern Matching Automaton
 
Jun-ichi Aoe

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan
E-mail: aoe@is.tokushima-u.ac.jp

Papers on our conference
1996: An Efficient Multi-Attribute Pattern Matching Machine
1997: An Efficient Trie Hashing Method Using a Compact Binary Trie
1998: A Fast Morphological Analysis Using the Extended AC Machine for Oriental Languages
 
Setsuo Arikawa


Department of Informatics
Kyushu University 33
Fukuoka 812-8581
Japan
E-mail: arikawa@i.kyushu-u.ac.jp

Papers on our conference
2001: Construction of the CDAWG for a Trie
2002: A Note on Randomized Algorithm for String Matching with Mismatches
 
Abdullah N. Arslan

Department of Computer Science
University of Vermont
Burlington
USA
E-mail: aarslan@cs.uvm.edu

Papers on our conference
2004: Algorithms for the Constrained Longest Common Subsequence Problems
 
Rafael D. de Azevedo

Center for Telecommunications Studies (CETUC)
Catholic University of Rio de Janeiro
Marqus de S. Vincente, 255
22453-900 RIO DE JANEIRO, RJ
Brazil

Papers on our conference
1999: On Procedures for Multiple-string Match with Respect to Two Sets
 
Kensuke Baba

PRESTO, Japan Science and Technology Corporation
Honcho 4-1-8, Kawaguchi City
Saitama 332-0012
Japan
E-mail: baba@i.kyushu-u.ac.jp

Papers on our conference
2002: A Note on Randomized Algorithm for String Matching with Mismatches
2003: An Efficient Mapping for Score of String Matching
 
Miroslav Balík


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Miroslav.Balik@fit.cvut.cz
WWW: cs.felk.cvut.cz/webis/people/balikm.html
phone: (+420) 224 357 236

Papers on our conference
1998: Implementation of DAWG
2000: Condensation Principle
 
Hideo Bannai


Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan
E-mail: bannai@i.kyushu-u.ac.jp
WWW: www.i.kyushu-u.ac.jp/~bannai/

Papers on our conference
2006: Reachability on Suffix Tree Graphs
2008: Parameterized Suffix Arrays for Binary Strings
2008: New Lower Bounds for the Maximum Number of Runs in a String
2009: Finding Characteristic Substrings from Compressed Texts
2009: Bit-parallel algorithms for computing all the runs in a string
 
Md. Faizul Bari

Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka, Bangladesh
E-mail: faizulbari@cse.buet.ac.bd

Papers on our conference
2009: Finding all covers of an indeterminate string in O(n) time on average
 
Paweł Baturo

Faculty of Mathematics and Computer Science
Nicolaus Copernicus University
Toruń, Poland
E-mail:

Papers on our conference
2008: Usefulness of Directed Acyclic Subword Graphs in Problems Related to Standard Sturmian Words
 
Behshad Behzadi

Laboratoire d'Informatique (LIX)
Ecole Polytechnique
Palaiseau Cedex
France

E-mail: behzadi@lix.polytechnique.fr
WWW: www.lix.polytechnique.fr/Labo/Behshad.Behzadi/
phone: +33 1 69 33 34 79

Papers on our conference
2003: The Transformation Distance Problem Revisited
 
Miri Ben-Nissan

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: miribn@gmail.com

Papers on our conference
2006: Working with Compressed Concordances
 
Kirke Bent

Parallel Business Software
29 Pine Street
Chatham
NJ 07928, USA
E-mail: parbzsft@bellatlantic.net

Papers on our conference
2002: A Recursive Function for Calculating the Number of Legal Strings of Parentheses and for Calculating Catalan Numbers
 
Thomas Berry

Department of Computer Science
Liverpool John Moores University
Byrom Street
Liverpool
United Kingdom
E-mail: T.Berry@livjm.ac.uk

Papers on our conference
1999: A Fast String Matching Algorithm and Experimental Results
2001: Searching in an Efficiently Stored DNA Text Using a Hardware Solution
2001: A linear time string matching algorithm on average with efficient text storage
 
Martin Bloch


Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: bloch@fel.cvut.cz
WWW: cs.felk.cvut.cz/webis/people/bloch.html
phone: (+420) 224 357 251

Papers on our conference
1996: Efficiency of AC-Machine and SNFA in Practical String Matching
 
Leendert Botha

Department of Computer Science
Stellenbosch University,
South Africa
E-mail: lbotha@cs.sun.ac.za
WWW: http://www.cs.sun.ac.za/~lbotha/

Papers on our conference
2009: Feature Extraction for Image Pattern Matching with Cellular Automata
 
Béatrice Bouchou

Université François Rabelais de Tours
LI/Campus de Blois, France
3 place Jean Jaurés
41000 Blois, France
E-mail: beatrice.bouchou@univ-tours.fr

Papers on our conference
2005: Incremental String Correction: Towards Correction of XML Documents
 
Gerhard Brey

Centre for Computing in the Humanities
King's College London
26-29 Drury Lane
London WC2B 5RL
England
E-mail: gerhard.brey@kcl.ac.uk

Papers on our conference
2008: Edit Distance with Single-Symbol Combinations and Splits
 
Sreèko Brlek

Laboratoire de Combinatoire et d'Informatique Mathèmatique
Universitè du Quèbec à Montrèal
CP 8888, Succ. Centre-ville
Montrèal H3C3P8
Canada
E-mail: brlek@lacim.uqam.ca
WWW: http://www.lacim.uqam.ca/~brlek/

Papers on our conference
2006: On the Problem of Deciding If a Polyomino Tiles the Plane by Translation
 
Stefan Burkhardt

Max-Planck-Institut fur Informatik
Stuhlsatzenhausweg 85
66123 Saarbrucken
Germany
E-mail: stburk@mpi-sb.mpg.de

Papers on our conference
2004: BDD-Based Analysis of Gapped q-Gram Filters
 
Matteo Campanelli

Scuola Superiore di Catania
Università di Catania
Via San Nullo 5/i
I-95123 Catania
Italy
E-mail: macampanelli@ssc.unict.it

Papers on our conference
2009: An Efficient Algorithm for Approximate Pattern Matching with Swaps
 
Domenico Cantone

Dipartimento di Matematica e Informatica
Le facolta scienze matematiche, fisiche e naturali
Università di Catania
Viale Andrea Doria 6
95125 Catania
Italy
E-mail: cantone@dmi.unict.it

Papers on our conference
2003: Forward-Fast-Search: Another Fast Variant of the Boyer-Moore String Matching Algorithm
2004: Efficient Algorithms for the δ-Approximate String Matching Problem in Musical Sequences
2005: A Space Efficient Bit-Parallel Algorithm for the Multiple String Matching Problem
2006: On Some Combinatorial Problems Concerning the Harmonic Structure of Musical Chord Sequences
2008: New Efficient Bit-Parallel Algorithms for the δ-Matching Problem with α-Bounded Gaps in Musical Sequences
2009: Adapting Boyer-Moore-Like Algorithms for Searching Huffman Encoded Texts
2009: An Efficient Algorithm for Approximate Pattern Matching with Swaps
 
Jean-Marc Champarnaud

LIFAR
Universite de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: champarnaud@dir.univ-rouen.fr
WWW: jmc.feydakins.org
WWW: www.univ-rouen.fr/psi

Papers on our conference
2002: Split and join for minimizing: Brzozowski's algorithm
 
Christian Charras

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Christian.Charras@dir.univ-rouen.fr
WWW: www.dir.univ-rouen.fr/~charras/

Papers on our conference
1998: Exact String Matching Animation in Java
 
Ahmed Cheriat

Université François Rabelais de Tours
LI/Campus de Blois, France
3 place Jean Jaurés
41000 Blois, France
E-mail: ahmed.cheriat@etu.univ-tours.fr

Papers on our conference
2005: Incremental String Correction: Towards Correction of XML Documents
 
Manolis Christodoulakis

School of Computing & Technology
University of East London
Docklands Campus, 4-6 University Way
London E16 2RD
England
E-mail: m.christodoulakis@uel.ac.uk

Papers on our conference
2003: Approximate Seeds of Strings
2006: Song Classifications for Dancing
2008: Edit Distance with Single-Symbol Combinations and Splits
 
Ferdinando Cicalese

Dipartimento di Informatica ed Applicazioni
Università di Salerno
Italy
E-mail: cicalese@dia.unisa.it

Papers on our conference
2009: Searching for Jumbled Patterns in Strings
 
Luigi Cinque

Computer Science Department
Università di Roma "La Sapienza"
Via Salaria 113
00198 Rome
Italy
E-mail: cinque@di.uniroma1.it

Papers on our conference
2004: A Simple Lossless Compression Heuristic for Grey Scale Images
2008: Lossless Image Compression by Block Matching on Practical Massively Parallel Architectures
2008: Speeding up Lossless Image Compression: Experimental Results on a Parallel Machine
 
M. Clausen

Institut fur Informatik V
Universitat Bonn
Romerstrase 164
D-53117 Bonn
Germany
E-mail: Clausen@cs.uni-bonn.de

Papers on our conference
1999: A New Practical Linear Space Algorithm for the Longest Common Subsequence Problem
 
Loek Cleophas

FASTAR
Finite Automata Systems – Theoretical and Applied Research group

Department of Computer Science,
University of Pretoria
Pretoria 0002
Republic of South Africa
E-mail: loek@loekcleophas.com
WWW: www.win.tue.nl/~lcleopha
phone: 040 - 247 2865/5145

Papers on our conference
2003: Constructing Factor Oracles
2005: A Missing Link in Root-to-Frontier Tree Pattern Matching
2006: Efficient Automata Constructions and Approximate Automata
2009: Taxonomies of Regular Tree Algorithms
2009: On Minimizing Deterministic Tree Automata
 
Wikus Coetser

Department of Computer Science,
University of Pretoria
Pretoria 0002
Republic of South Africa
E-mail: spring.haas.meester@gmail.com

Papers on our conference
2008: On Regular Expression Hashing to Reduce FA Size
 
Richard Cole


Computer Science Department
Courant Institute of Mathematical Sciences
New York University
U.S.A.
E-mail: cole@cs.nyu.edu
WWW: www.cs.nyu.edu/cs/faculty/cole/
phone: (212) 998-3119

Papers on our conference
2003: Computing the Minimum k-Cover of a String
 
Ehud S. Conley

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: konli@cs.biu.ac.il

Papers on our conference
2006: Using Alignment for Multilingual Text Compression
 
François Coste

IRISA/INRIA Rennes Bretagne Atlantique
Campus de Beaulieu
35042 Rennes Cedex
France
E-mail: francois.coste@irisa.fr

Papers on our conference
2008: In-place Update of Suffix Array while Recoding Words
 
Salvatore Cristofaro

Dipartimento di Matematica e Informatica
Le facolta scienze matematiche, fisiche e naturali
Università di Catania
Viale Andrea Doria 6
95125 Catania
Italy
E-mail: cristofaro@dmi.unict.it

Papers on our conference
2004: Efficient Algorithms for the δ-Approximate String Matching Problem in Musical Sequences
2006: On Some Combinatorial Problems Concerning the Harmonic Structure of Musical Chord Sequences
2008: New Efficient Bit-Parallel Algorithms for the δ-Matching Problem with α-Bounded Gaps in Musical Sequences
 
Maxime Crochemore


Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: Maxime.Crochemore@kcl.ac.uk
WWW: www.dcs.kcl.ac.uk/staff/mac/
WWW: www-igm.univ-mlv.fr/~mac/index_en.html

Papers on our conference
2001: Approximate String Matching in Musical Sequences
2008: Conservative String Covering of Indeterminate Strings
2009: On-line construction of a small automaton for a finite set of words
 
Ahmad Daaboul

Institut Gaspard-Monge
Universite de Marne-la-Vallee
France
E-mail: Daaboul@monge.univ-mlv.fr

Papers on our conference
1998: Local Prediction for Lossless Image Compression
 
Sergio De Agostino


Computer Science Department
Università di Roma "La Sapienza"
Via Salaria 113
00198 Rome
Italy
E-mail: deagostino@di.uniroma1.it
WWW: www.computing.armstrong.edu/FacNStaff/agostino/index.html

Papers on our conference
2002: A Work-Optimal Parallel Implementation of Lossless Image Compression by Block Matching
2004: A Simple Lossless Compression Heuristic for Grey Scale Images
2005: Bounded Size Dictionary Compression: Relaxing the LRU Deletion Heuristic
2008: Lossless Image Compression by Block Matching on Practical Massively Parallel Architectures
2008: Speeding up Lossless Image Compression: Experimental Results on a Parallel Machine
2009: Compressing Bi-Level Images by Block Matching on a Tree Architecture
 
Satoshi Deguchi

Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan
E-mail: satoshi.deguchi@i.kyushu-u.ac.jp

Papers on our conference
2008: Parameterized Suffix Arrays for Binary Strings
 
O.C. Dogaru

West University of Timisoara
Bd.V.Parvan, nr. 4
Timisoara, 1900
Romania
E-mail: Dogaru@info.uvt.ro

Papers on our conference
1998: On the All Occurrences of a Word in a Text
 
Jean-Pierre Duval

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Jean-Pierre.Duval@univ-rouen.fr

Papers on our conference
2002: Border Array on Bounded Alphabet
 
Jiøí Dvorský

Computer Science Department
Palacky University of Olomouc
Tomkova 40
779 00 Olomouc
Czech Republic
E-mail: jiri.dvorsky@upol.cz

Papers on our conference
2000: Word-based Compression Method with Direct Access
 
Omer Egecioglu

Department of Computer Science
University of California, Santa Barbara
USA
E-mail: omer@cs.ucsb.edu

Papers on our conference
2004: Algorithms for the Constrained Longest Common Subsequence Problems
 
Simone Faro

Dipartimento di Matematica e Informatica
Le facolta scienze matematiche, fisiche e naturali
Università di Catania
Viale Andrea Doria 6
95125 Catania
Italy
E-mail: faro@dmi.unict.it

Papers on our conference
2003: Forward-Fast-Search: Another Fast Variant of the Boyer-Moore String Matching Algorithm
2004: Efficient Algorithms for the δ-Approximate String Matching Problem in Musical Sequences
2005: A Space Efficient Bit-Parallel Algorithm for the Multiple String Matching Problem
2006: On Some Combinatorial Problems Concerning the Harmonic Structure of Musical Chord Sequences
2008: Efficient Variants of the Backward-Oracle-Matching Algorithm
2008: New Efficient Bit-Parallel Algorithms for the δ-Matching Problem with α-Bounded Gaps in Musical Sequences
2009: Adapting Boyer-Moore-Like Algorithms for Searching Huffman Encoded Texts
2009: An Efficient Algorithm for Approximate Pattern Matching with Swaps
 
Abolfazl Fatholahzadeh

Supelec - Campus de Metz
2, rue Edouard Belin
57078 Metz
France
E-mail: Abolfazl.Fatholahzadeh@supelec.fr

Papers on our conference
2003: Learning the Morphological Features of a Large Set of Words
 
Mírian Halfeld Ferrari

Université François Rabelais de Tours
LI/Campus de Blois, France
3 place Jean Jaurés
41000 Blois, France
E-mail: mirian@univ-tours.fr

Papers on our conference
2005: Incremental String Correction: Towards Correction of XML Documents
 
Pascal Ferraro

LaBRI
University of Bordeaux I
Unité Mixte de Recherche CNRS (UMR 5800)
33405 Talence cedex, France

Papers on our conference
2009: Validation and Decomposition of Partially Occluded Images with Holes
 
Gabriele Fici

Dipartimento di Informatica ed Applicazioni
Università di Salerno
Italy
E-mail: fici@dia.unisa.it

Papers on our conference
2009: Searching for Jumbled Patterns in Strings
 
Weiler A. Finamore

Center for Telecommunications Studies (CETUC)
Catholic University of Rio de Janeiro
Marqus de S. Vincente, 255
22453-900 RIO DE JANEIRO, RJ
Brazil
E-mail: Weiler@cetuc.pur-rio.br

Papers on our conference
1999: On Procedures for Multiple-string Match with Respect to Two Sets
 
Marc Fontaine

Max-Planck-Institut fur Informatik
Stuhlsatzenhausweg 85
66123 Saarbrucken
Germany
E-mail: fontaine@studcs.uni-sb.de

Papers on our conference
2004: BDD-Based Analysis of Gapped q-Gram Filters
 
Franti¹ek Franìk

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: franek@mcmaster.ca
WWW: www.cas.mcmaster.ca/~franya/
phone: 1-905-525-9140 ext. 23233

Papers on our conference
2000: Repetitions in two-pattern strings
2002: A Note on Crochemore's Repetitions Algorithm a Fast Space-Efficient Approach
2004: Sorting suffixes of two-pattern strings
2005: Reconstructing a Suffix Array
2006: An Asymptotic Lower Bound for the Maximal-Number-of-Runs Function
2009: Crochemore's repetitions algorithm revisited–computing runs
 
Kimmo Fredriksson

Department of Computer Science
University of Joensuu
PO Box 111, FIN--80101 Joensuu
Finland
E-mail: kfredrik@cs.joensuu.fi
phone: +358 9 191 44119

Papers on our conference
2005: Flexible Music Retrieval in Sublinear Time
2006: Efficient Algorithms for (δ, γ, α)-Matching
 
Masao Fuketa

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan

Papers on our conference
1998: A Fast Morphological Analysis Using the Extended AC Machine for Oriental Languages
 
Matthias Gallé

IRISA/INRIA Rennes Bretagne Atlantique
Campus de Beaulieu
35042 Rennes Cedex
France
E-mail: matthias.galle@irisa.fr

Papers on our conference
2008: In-place Update of Suffix Array while Recoding Words
 
Christian Gautier

UMR 5558 CNRS Biométrie et Biologie Evolutive
Université Claude Bernard Lyon 1
43, Bd. du 11 Novembre 1918
69622 Villeurbanne cedex
France

Papers on our conference
2006: A Markovian Approach for the Analysis of the Gene Structure
 
Laura Giambruno

Dipartimento di Matematica e Applicazioni,
Università di Palermo, Palermo, Italy
E-mail: lgiambr@math.unipa.it

Papers on our conference
2009: On-line construction of a small automaton for a finite set of words
 
Emanuele Giaquinta

Dipartimento di Matematica e Informatica
Le facolta scienze matematiche, fisiche e naturali
Università di Catania
Viale Andrea Doria 6
95125 Catania
Italy
E-mail: giaquinta@dmi.unict.it

Papers on our conference
2009: Adapting Boyer-Moore-Like Algorithms for Searching Huffman Encoded Texts
2009: An Efficient Algorithm for Approximate Pattern Matching with Swaps
 
H. Goeman

Institut fur Informatik V
Universitat Bonn
Romerstrase 164
D-53117 Bonn
Germany
E-mail: Goeman@cs.uni-bonn.de

Papers on our conference
1999: A New Practical Linear Space Algorithm for the Longest Common Subsequence Problem
 
Szymon Grabowski

Computer Engineering Department
Technical University of Łódź
Al. Politechniki 11, 90–924 Łódź
Poland
E-mail: sgrabow@kis.p.lodz.pl

Papers on our conference
2005: A Simple Alphabet-Independent FM-Index
2006: Efficient Algorithms for (δ, γ, α)-Matching
2006: FM-KZ: An Even Simpler Alphabet-Independent FM-Index
 
Richard Groult

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Richard.Groult@univ-rouen.fr

Papers on our conference
2003: A Linear Algorithm for the Detection of Evolutive Tandem Repeats
 
Laurent Guéguen

UMR 5558 CNRS Biométrie et Biologie Evolutive
Université Claude Bernard Lyon 1
43, Bd. du 11 Novembre 1918
69622 Villeurbanne cedex
France

Papers on our conference
2006: A Markovian Approach for the Analysis of the Gene Structure
 
Kees Hemerik

Department of Mathematics and Computer Science
Technische Universiteit Eindhoven
P.O. Box 513, NL-5600 MB Eindhoven
The Netherlands
E-mail: c.hemerik@tue.nl

Papers on our conference
2005: A Missing Link in Root-to-Frontier Tree Pattern Matching
2009: Taxonomies of Regular Tree Algorithms
 
Glen Herrmannsfeldt

Department of Molecular Biotechnology
University of Washington
Box 357730
Seattle, WA 98195-7730
USA
E-mail: gah@mbt.washington.edu

Papers on our conference
1998: A Highly Parallel Finite State Automaton Processor for Biological Pattern Matching
 
Yasuto Higa

Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan
E-mail: y-higa@i.kyushu-u.ac.jp

Papers on our conference
2006: Reachability on Suffix Tree Graphs
 
Fumihito Higashijima

Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan

Papers on our conference
2008: Parameterized Suffix Arrays for Binary Strings
 
Kazunori Hirashima

Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan
E-mail: kazunori.hirashima@inf.kyushu-u.ac.jp

Papers on our conference
2009: Bit-parallel algorithms for computing all the runs in a string
 
Sachio Hirokawa

Computing and Communications Center
Kyushu University 33
Hakozaki 6-10-1
Higashi-ku, Fukuoka 812-8581
Japan
E-mail: hirokawa@cc.kyushu-u.ac.jp

Papers on our conference
2003: An Efficient Mapping for Score of String Matching
 
Václav Hlaváè

Center for Machine Perception
Department for Cybernetics
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: hlavac@fel.cvut.cz
phone: +420 22435 7465

Papers on our conference
2006: 2D Context-Free Grammars: Mathematical Formulae Recognition
 
Jan Holub


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Jan.Holub@fit.cvut.cz
WWW: www.stringology.org/~holub/
phone: (+420) 224 357 644

Papers on our conference
1996: Reduced Nondeterministic Finite Automata for Approximate String Matching
1997: 6D Classification of Pattern Matching Problems
1997: Simulation of NFA in Approximate String and Sequence Matching
1998: Dynamic Programming for Reduced NFAs for Approximate String and Sequence Matching
 
Hiromasa Hoshino

Department of Informatics
Kyushu University 33
Fukuoka 812-8581
Japan
E-mail: hoshino@i.kyushu-u.ac.jp
WWW: www.i.kyushu-u.ac.jp/~hoshino/index_e.html

Papers on our conference
2001: Construction of the CDAWG for a Trie
 
Heikki Hyyrö


Department of Computer and Information Sciences
University of Tampere
Finland
E-mail: Heikki.Hyyro@cs.uta.fi
WWW: www.cs.uta.fi/~helmu/

Papers on our conference
2002: A Bit-Vector Algorithm for Computing Levenshtein and Damerau Edit Distances
2004: A Note on Bit-Parallel Alignment Computation
2005: Bit-Parallel Computation of Local Similarity Score Matrices with Unitary Weights
2009: An input sensitive online algorithm for LCS computation
 
Daisuke Ikeda

Computing and Communications Center
Kyushu University 33
Hakozaki 6-10-1
Higashi-ku, Fukuoka 812-8581
Japan
E-mail: daisuke@cc.kyushu-u.ac.jp

Papers on our conference
2003: An Efficient Mapping for Score of String Matching
 
Costas S. Iliopoulos


Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: csi@dcs.kcl.ac.uk
WWW: www.dcs.kcl.ac.uk/staff/csi/

Papers on our conference
1998: Validating and Decomposing Partially Occluded Two-Dimensional Images (Extended Abstract)
2000: Computing Approximate Repetitions in Musical Sequences
2001: Approximate String Matching in Musical Sequences
2002: String Matching with Gaps for Musical Melodic Recognition
2002: String Regularities with Don't Cares
2003: Approximate Seeds of Strings
2003: Computing the Minimum k-Cover of a String
2003: Computing the Repetitions in a Weighted Sequence
2004: A First Approach to Finding Common Motifs With Gaps
2005: Approximation Algorithm for the Cyclic Swap Problem
2006: Song Classifications for Dancing
2008: Conservative String Covering of Indeterminate Strings
2009: Validation and Decomposition of Partially Occluded Images with Holes
2009: Parallel algorithms for degenerate and weighted sequences derived from high throughput sequencing technologies (updated Jan 2010)
 
Shunsuke Inenaga

Graduate School of Information Science and Electrical Engineering
Kyushu University
744 Motooka, Nishiku, Fukuoka 819-0395
Japan
E-mail: inenaga@c.csce.kyushu-u.ac.jp
WWW: www.ssp.isee.kyushu-u.ac.jp/~inenaga/

Papers on our conference
2001: Construction of the CDAWG for a Trie
2002: A Note on Randomized Algorithm for String Matching with Mismatches
2002: Bidirectional Construction of Suffix Trees
2004: A Fully Compressed Pattern Matching Algorithm for Simple Collage Systems
2006: Sparse Compact Directed Acyclic Word Graphs
2006: Reachability on Suffix Tree Graphs
2008: Parameterized Suffix Arrays for Binary Strings
2009: Finding Characteristic Substrings from Compressed Texts
 
Akira Ishino

Graduate School of Information Science
Tohoku University
Aramaki aza Aoba 6-6-05, Aoba-ku
Sendai 980-8579
Japan
E-mail: ishino@ecei.tohoku.ac.jp

Papers on our conference
2008: New Lower Bounds for the Maximum Number of Runs in a String
2008: Average Value of Sum of Exponents of Runs in Strings
2009: Bit-parallel algorithms for computing all the runs in a string
 
Kimihiro Iwasaki

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan

Papers on our conference
1998: A Fast Morphological Analysis Using the Extended AC Machine for Oriental Languages
 
Jan Janou¹ek


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Jan.Janousek@fit.cvut.cz
WWW: users.fit.cvut.cz/~janousej/
phone: (+420) 224 359 872

Papers on our conference
2009: String Suffix Automata and Subtree Pushdown Automata
 
Inuka Jayasekera

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: inuka.jayasekera@kcl.ac.uk
WWW: www.dcs.kcl.ac.uk/pg/jayasek/

Papers on our conference
2008: Conservative String Covering of Indeterminate Strings
 
Yue Jiang

Lane Department of Computer Science and Electrical Engineering
West Virginia University
Morgantown, WV 26506 USA
E-mail: yue@csee.wvu.edu

Papers on our conference
2008: The Virtual Suffix Tree: An Efficient Data Structure for Suffix Trees
2009: Crochemore's repetitions algorithm revisited–computing runs
 
Mei Jiang

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: jiangm5@mcmaster.ca

 
Jean-Michel Jolion

E-mail: jean-michel.jolion@liris.cnrs.fr

Papers on our conference
2008: On the Uniform Distribution of Strings
 
Winfried Just

Department of Mathematics
Ohio University
Athens
Ohio 45701
U.S.A.
E-mail: just@math.ohiou.edu

Papers on our conference
2000: Multiple Sequence Alignment as a Facility Location Problem
 
Vojtìch Kaèírek

Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague

 
Juha Kärkkäinen

Department of Computer Science
University of Helsinki
Finland
E-mail: Juha.Karkkainen@cs.helsinki.fi

Papers on our conference
2004: BDD-Based Analysis of Gapped q-Gram Filters
2005: Alphabets in Generic Programming
 
Yair Kaufman

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: kaufmay@cs.biu.ac.il

Papers on our conference
2004: Semi-Lossless Text Compression
 
S. Keller

Department of Computer Science
Liverpool John Moores University
Byrom Street
Liverpool
United Kingdom
E-mail: S.Keller@livjm.ac.uk

Papers on our conference
2001: Searching in an Efficiently Stored DNA Text Using a Hardware Solution
 
A. Khorsi

CSD
University of Djilali Liabes
Sidi-Bel-Abbes
Algeria
E-mail: ahmed_khorsi@lycos.com

Papers on our conference
2002: Split and join for minimizing: Brzozowski's algorithm
 
Shmuel Tomi Klein


Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: tomi@cs.biu.ac.il

Papers on our conference
2004: Semi-Lossless Text Compression
2005: Compressed Pattern Matching in JPEG Images
2006: Using Alignment for Multilingual Text Compression
2006: Modeling Delta Encoding of Compressed Files
2006: Working with Compressed Concordances
2008: Huffman Coding with Non-Sorted Frequencies
2009: Delta Encoding in a Compressed Domain
2009: On the Usefulness of Backspace
 
Josef Koláø


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Josef.Kolar@fit.cvut.cz
WWW: cs.felk.cvut.cz/kp/homepage/kolar.html
WWW: cs.felk.cvut.cz/webis/people/kolar.html
phone: (+420) 224 357 403

 
Derrick G. Kourie

Department of Computer Science,
University of Pretoria
Pretoria 0002
Republic of South Africa
E-mail: dkourie@cs.up.ac.za

Papers on our conference
2004: A Framework for the Dynamic Implementation of Finite Automata for Performance Enhancement
2005: Reordering Finite Automata States for Fast String Recognition
2006: A Concurrent Specification of Brzozowski's DFA Construction Algorithm
2006: Efficient Automata Constructions and Approximate Automata
2006: On Implementation and Performance of Table-Driven DFA-Based String Processors
2006: FireμSat: An Algorithm to Detect Microsatellites in DNA
2008: A Concurrent Specification of an Incremental DFA Minimisation Algorithm
2008: On Regular Expression Hashing to Reduce FA Size
2009: On Minimizing Deterministic Tree Automata
 
Tomá¹ Koutný

Computer Science Department
Palacky University of Olomouc
Tomkova 40
779 00 Olomouc
Czech Republic
E-mail: Tomas.Koutny@upol.cz

Papers on our conference
1997: Algebra of Pattern Matching Problems
 
Michal Krátký


Department of Computer Science
Faculty of Electrical Engineering and Informatics
VSB-Technical University Ostrava
17. listopadu 15
708 33 Ostrava
Czech Republic
E-mail: michal.kratky@vsb.cz
WWW: www.cs.vsb.cz/kratky/

Papers on our conference
2002: Image Recognition Using Finite Automata
 
Manfred Kufleitner

FMI,
Universität Stuttgart
Universitätsstraße 38, 70569 Stuttgart, Germany
E-mail: kufleitner@fmi.uni-stuttgart.de

Papers on our conference
2009: On Bijective Variants of the Burrows-Wheeler Transform
 
M. Oğuzhan Külekci

TÜBİTAK-UEKAE
National Research Institute of Electronics & Cryptology
41470 Gebze, Kocaeli, Turkey
E-mail: kulekci@uekae.tubitak.gov.tr

Papers on our conference
2009: Filter Based Fast Matching of Long Patterns by Using SIMD Instructions
 
Masahiro Kurokawa

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: kurokawa@dcs.kcl.ac.uk

Papers on our conference
2002: String Matching with Gaps for Musical Melodic Recognition
 
Kazuhiko Kusano

Graduate School of Information Science
Tohoku University
Aramaki aza Aoba 6-6-05, Aoba-ku
Sendai 980-8579
Japan
E-mail: kusano@shino.ecei.tohoku.ac.jp

Papers on our conference
2008: New Lower Bounds for the Maximum Number of Runs in a String
2008: Average Value of Sum of Exponents of Runs in Strings
 
Jan Lahoda


Sun Microsystems Czech, s.r.o.
The Park, Building 3
V Parku 2308/8
148 00 Praha 4
E-mail: Jan.Lahoda@seznam.cz

Papers on our conference
2005: General Pattern Matching on Regular Collage System
 
Giuseppe Lancia

Dipartimento di Matematica e Informatica
Via delle Scienze 206
33100 Udine
Italy
E-mail: lancia@dimi.uniud.it

Papers on our conference
2006: Flipping Letters to Minimize the Support of a String
 
Gad M. Landau

Department of Computer Science
Faculty of Social Sciences
University of Haifa
Mount Carmel, 31905 Haifa
Israel
E-mail: landau@cs.haifa.ac.il

Papers on our conference
2005: Approximation Algorithm for the Cyclic Swap Problem
2006: Can Dist Tables Be Merged in Linear Time – An Open Problem
2008: Conservative String Covering of Indeterminate Strings
 
Uli Laube

Institut für Informatik
Johann Wolfgang Goethe-Universität Frankfurt am Main
Robert-Mayer-Straβe 11-15
60054 Frankfurt am Main
Germany
E-mail: laube@thi.cs.uni-frankfurt.de

Papers on our conference
2004: Conditional Inequalities and the Shortest Common Superstring Problem
 
Thierry Lecroq


LITIS EA 4108
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: thierry.lecroq@univ-rouen.fr
WWW: www-igm.univ-mlv.fr/~lecroq/

Papers on our conference
1998: Exact String Matching Animation in Java
2000: Computing Approximate Repetitions in Musical Sequences
2001: Approximate String Matching in Musical Sequences
2002: Border Array on Bounded Alphabet
2005: From Suffix Trees to Suffix Vectors
2008: Dynamic Burrows-Wheeler Transform
2008: Efficient Variants of the Backward-Oracle-Matching Algorithm
 
Arnaud Lefebvre

UMR 6037 - ABISS
Universite de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Arnaud.Lefebvre@univ-rouen.fr

Papers on our conference
2002: Border Array on Bounded Alphabet
 
Martine Leonard

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Martine.Leonard@univ-rouen.fr

Papers on our conference
2003: A Linear Algorithm for the Detection of Evolutive Tandem Repeats
2008: Dynamic Burrows-Wheeler Transform
 
Arthur M. Lesk

Department of Hematology
University of Cambridge Clinical School
MRC Centre
Hills Road
Cambridge CB2 2QH
United Kingdom
E-mail: aml2@mrc-lmb.cam.ac.uk

Papers on our conference
1998: Application of Sequence Alignment Methods to Multiple Structural Alignment and Superposition
 
Peter Leupold

Department of Mathematics, Faculty of Science
Kyoto Sangyo University
Kyoto 603-8555, Japan
E-mail: leupold@cc.kyoto-su.ac.jp

Papers on our conference
2009: Reducing Repetitions
 
F. Liberati

Computer Science Department
Università di Roma "La Sapienza"
Via Salaria 113
00198 Rome
Italy

Papers on our conference
2004: A Simple Lossless Compression Heuristic for Grey Scale Images
 
Jie Lin

Lane Department of Computer Science and Electrical Engineering
West Virginia University
Morgantown, WV 26506 USA
E-mail: jlin@mix.wvu.edu

Papers on our conference
2008: The Virtual Suffix Tree: An Efficient Data Structure for Suffix Trees
 
Zsuzsanna Lipták

AG Genominformatik
Technische Fakultät
Bielefeld Universität
Germany
E-mail: zsuzsa@cebitec.uni-bielefeld.de

Papers on our conference
2009: Searching for Jumbled Patterns in Strings
 
Luca Lombardi

Computer Science Department
University of Pavia
Via Ferrara 1
27100 Pavia
Italy
E-mail: luca.lombardi@unipv.it

Papers on our conference
2008: Speeding up Lossless Image Compression: Experimental Results on a Parallel Machine
 
Weilin Lu

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada

Papers on our conference
2000: Repetitions in two-pattern strings
 
Veli Makinen


Technische Fakultät
Bielefeld Universität
Germany
E-mail: veli@cebitec.uni-bielefeld.de
WWW: www.cs.helsinki.fi/u/vmakinen/
phone: +358 9 191 44119

Papers on our conference
2003: Matching Numeric Strings under Noise
2005: Flexible Music Retrieval in Sublinear Time
2005: A Simple Alphabet-Independent FM-Index
 
Alban Mancheron

L.I.N.A, Université de Nantes,
2, Rue de la Houssinière, B.P. 92208
44322 Nantes Cedex 3
France
E-mail: Mancheron@lina-univ-nantes.fr

Papers on our conference
2004: Combinatorial Characterization of the Language Recognized by Factor and Suffix Oracles
 
Wataru Matsubara

Graduate School of Information Science
Tohoku University
Aramaki aza Aoba 6-6-05, Aoba-ku
Sendai 980-8579
Japan
E-mail: matsubara@shino.ecei.tohoku.ac.jp

Papers on our conference
2008: New Lower Bounds for the Maximum Number of Runs in a String
2008: Average Value of Sum of Exponents of Runs in Strings
2009: Bit-parallel algorithms for computing all the runs in a string
 
James McHugh


New Jersey Institute of Technology College of Computing Sciences
323 M.L.King Blvd. University Heights Newark
NJ 07102-1982, USA
E-mail: mchugh@oak.njit.edu
WWW: www.cs.njit.edu/~mchugh

Papers on our conference
2004: A First Approach to Finding Common Motifs With Gaps
 
Moti Meir

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: moti.meir@gmail.com

Papers on our conference
2009: Delta Encoding in a Compressed Domain
 
Boøivoj Melichar


Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: melichar@fel.cvut.cz
WWW: cs.felk.cvut.cz/webis/people/melichar.html
phone: (+420) 224 357 287

Papers on our conference
1996: Space Complexity of Linear Time Approximate String Matching
1997: 6D Classification of Pattern Matching Problems
1998: Directed Acyclic Subsequence Graph
2003: Operation L-INSERT on Factor Automaton
2004: Arithmetic Coding in Parallel
2005: General Pattern Matching on Regular Collage System
2005: Backward Pattern Matching Automaton
2006: 2D Bitwise Memory Matrix: A Tool for Optimal Parallel Approximate Pattern Matching
 
Christelle Melo de Lima

UMR 5558 CNRS Biométrie et Biologie Evolutive
Université Claude Bernard Lyon 1
43, Bd. du 11 Novembre 1918
69622 Villeurbanne cedex
France
E-mail: melo@biomserv.univ-lyon1.fr
phone: +04 72 44 81 42

Papers on our conference
2006: A Markovian Approach for the Analysis of the Gene Structure
 
Mirka Miller

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England

School of Electrical Engineering and Computer Science
The University of Newcastle
Callaghan NSW 2308, Australia

Digital Ecosystems & Business Intelligence Institute, Curtin University,
GPO Box U1987
Perth WA 6845, Australia
E-mail: mirka.miller@newcastle.edu.au

Papers on our conference
2009: Parallel algorithms for degenerate and weighted sequences derived from high throughput sequencing technologies (updated Jan 2010)
 
Christophe Moan

L.I.N.A, Université de Nantes,
2, Rue de la Houssinière, B.P. 92208
44322 Nantes Cedex 3
France
E-mail: Moan@lina-univ-nantes.fr

Papers on our conference
2004: Combinatorial Characterization of the Language Recognized by Factor and Suffix Oracles
 
Manal Mohamed

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: manal@dcs.kcl.ac.uk
phone: +44 20 7848 2475

Papers on our conference
2002: String Regularities with Don't Cares
2003: Computing the Minimum k-Cover of a String
2005: Approximation Algorithm for the Cyclic Swap Problem
2009: Validation and Decomposition of Partially Occluded Images with Holes
 
Laurent Mouchard

LITIS EA 4108
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: Laurent.Mouchard@univ-rouen.fr
WWW: www.dir.univ-rouen.fr/~lm

Papers on our conference
2000: Computing Approximate Repetitions in Musical Sequences
2002: String Regularities with Don't Cares
2003: A Linear Algorithm for the Detection of Evolutive Tandem Repeats
2003: Computing the Repetitions in a Weighted Sequence
2008: Dynamic Burrows-Wheeler Transform
 
Pavel Mu¾átko

Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague

Papers on our conference
1996: Approximate Regular Expression Matching
 
Tetsuya Nakatoh

Computing and Communications Center
Kyushu University 33
Hakozaki 6-10-1
Higashi-ku, Fukuoka 812-8581
Japan
E-mail: nakatoh@cc.kyushu-u.ac.jp

Papers on our conference
2003: An Efficient Mapping for Score of String Matching
 
Gonzalo Navarro


Department of Computer Science
University of Chile
Blanco Encalada 2120
Santiago
Chile
E-mail: gnavarro@dcc.uchile.cl
WWW: www.dcc.uchile.cl/~gnavarro/eindex.html
phone: 56-2-689-2736

Papers on our conference
2003: Matching Numeric Strings under Noise
2005: Flexible Music Retrieval in Sublinear Time
2005: A Simple Alphabet-Independent FM-Index
2005: Bit-Parallel Computation of Local Similarity Score Matrices with Unitary Weights
2006: FM-KZ: An Even Simpler Alphabet-Independent FM-Index
2009: Combining Text Compression and String Matching: The Miracle of Self-Indexing
 
Ernest Ketcha Ngassam

School of Computing
University of South Africa
Pretoria 0003
South Africa
E-mail: ngassek@unisa.ac.za

Papers on our conference
2004: A Framework for the Dynamic Implementation of Finite Automata for Performance Enhancement
2005: Reordering Finite Automata States for Fast String Recognition
2006: Efficient Automata Constructions and Approximate Automata
2006: On Implementation and Performance of Table-Driven DFA-Based String Processors
 
Makoto Okada

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan

Papers on our conference
1997: An Efficient Trie Hashing Method Using a Compact Binary Trie
 
Jan Paèes

Institute of Molecular Genetics
Academy of Science of the Czech Republic
Flemingovo 2
166 37 Praha 6
Czech Republic
E-mail: hpaces@img.cas.cz

Papers on our conference
2001: Bioinformatics: tools for analysis of biological sequences
 
Geneviève Paquin

Laboratoire de Combinatoire et d'Informatique Mathèmatique
Universitè du Quèbec à Montrèal
CP 8888, Succ. Centre-ville
Montrèal H3C3P8
Canada
E-mail: genevieve.paquin@gmail.com

Papers on our conference
2008: Infinite Smooth Lyndon Words
 
T. Paranthoen

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: paranthoen@dir.univ-rouen.fr

Papers on our conference
2002: Split and join for minimizing: Brzozowski's algorithm
 
Kunsoo Park

School of Computer Science and Engineering
Seoul National University
Korea
E-mail: kpark@theory.snu.ac.kr

Papers on our conference
2003: Approximate Seeds of Strings
 
Katerina G. Perdikuri

Dept. of Computer Engineering and Informatics
Computer Technology Institute
University of Patras
Patras
Greece
E-mail: perdikur@ceid.upatras.gr

Papers on our conference
2002: String Regularities with Don't Cares
2003: Computing the Repetitions in a Weighted Sequence
 
Pierre Peterlongo

IRISA/INRIA Rennes Bretagne Atlantique
Campus de Beaulieu
35042 Rennes Cedex
France
E-mail: pierre.peterlongo@irisa.fr

Papers on our conference
2004: A First Approach to Finding Common Motifs With Gaps
2006: The Gapped-Factor Tree
2008: In-place Update of Suffix Array while Recoding Words
 
Marcin Piątkowski

Faculty of Mathematics and Computer Science
Nicolaus Copernicus University
Toruń, Poland
E-mail: martinp@mat.umk.pl

Papers on our conference
2008: Usefulness of Directed Acyclic Subword Graphs in Problems Related to Standard Sturmian Words
2009: Asymptotic Behaviour of the Maximal Number of Squares in Standard Sturmian Words
 
Didier Piau

Institut Camille Jordan UMR 5208
Université Claude Bernard Lyon 1
43, Bd. du 11 Novembre 1918
69622 Villeurbanne cedex
France

Papers on our conference
2006: A Markovian Approach for the Analysis of the Gene Structure
 
Marcelo da Silva Pinho

Center for Telecommunications Studies (CETUC)
Catholic University of Rio de Janeiro
Marqus de S. Vincente, 255
22453-900 RIO DE JANEIRO, RJ
Brazil

Papers on our conference
1999: On Procedures for Multiple-string Match with Respect to Two Sets
 
Yoan Pinzón


Department of System Engineering and Industrial Engineering
National University of Colombia
Colombia
E-mail: ypinzon@unal.edu.co
WWW: dis.unal.edu.co/profesores/ypinzon/index-eng.html

Papers on our conference
2000: Computing Approximate Repetitions in Musical Sequences
2001: Approximate String Matching in Musical Sequences
2005: Approximation Algorithm for the Cyclic Swap Problem
 
Nadia Pisanti

Department of Computer Science
University of Pisa
Italy
E-mail: pisanti@di.unipi.it
WWW: www.di.unipi.it/~pisanti

Papers on our conference
2004: A First Approach to Finding Common Motifs With Gaps
 
Solon P. Pissis

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: solon.pissis@kcl.ac.uk

Papers on our conference
2009: Parallel algorithms for degenerate and weighted sequences derived from high throughput sequencing technologies (updated Jan 2010)
 
Elise Prieur

LIFAR - ABISS
Université de Rouen
76821 Mont Saint Aignan Cedex
France
E-mail: elise.prieur@univ-rouen.fr

Papers on our conference
2005: From Suffix Trees to Suffix Vectors
 
Xavier Provençal

Laboratoire de Combinatoire et d'Informatique Mathèmatique
Universitè du Quèbec à Montrèal
CP 8888, Succ. Centre-ville
Montrèal H3C3P8
Canada
E-mail: provenca@lacim.uqam.ca

Papers on our conference
2006: On the Problem of Deciding If a Polyomino Tiles the Plane by Translation
 
Daniel Prù¹a

Center for Machine Perception
Department for Cybernetics
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: daniel.prusa@centrum.cz
phone: +420 776 266 241

Papers on our conference
2006: 2D Context-Free Grammars: Mathematical Formulae Recognition
 
Rafa³ Przywarski

Computer Engineering Department
Technical University of Łódź
Al. Politechniki 11, 90–924 Łódź
Poland

Papers on our conference
2006: FM-KZ: An Even Simpler Alphabet-Independent FM-Index
 
Simon J. Puglisi

School of Computer Science & Information Technology
RMIT University
GPO Box 2476V
Melbourne, Victoria 3001
Australia
E-mail: sjp@cs.rmit.edu.au

Papers on our conference
2005: A Taxonomy of Suffix Array Construction Algorithms
2008: Fast Optimal Algorithms for Computing All the Repeats in a String
 
Mohammad Sohel Rahman

Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka, Bangladesh
E-mail: msrahman@cse.buet.ac.bd

Papers on our conference
2006: Song Classifications for Dancing
2009: Finding all covers of an indeterminate string in O(n) time on average
 
Jussi Rautio

Laboratory of Information Processing Science
Helsinki University of Technology
Espoo
Finland
E-mail: Jussi.Rautio@hut.fi

Papers on our conference
2005: Context-dependent Stopper encoding
 
S. Ravindran

Department of Computer Science
Liverpool John Moores University
Byrom Street
Liverpool
United Kingdom
E-mail: S.Ravindran@livjm.ac.uk

Papers on our conference
1999: A Fast String Matching Algorithm and Experimental Results
2001: Searching in an Efficiently Stored DNA Text Using a Hardware Solution
2001: A linear time string matching algorithm on average with efficient text storage
 
Sébastien Rebecchi

E-mail: sebastien.rebecchi@liris.cnrs.fr

Papers on our conference
2008: On the Uniform Distribution of Strings
 
James F. Reid

Department of Computer Science
King's College London
Strand, London WC2R 2LS
England
E-mail: jfr@dcs.kcl.ac.uk
WWW: www.dcs.kcl.ac.uk/pg/jfr/

Papers on our conference
1998: Validating and Decomposing Partially Occluded Two-Dimensional Images (Extended Abstract)
 
Corné de Ridder

School of Computing
University of South Africa
Pretoria 0003
South Africa
E-mail: driddc@unisa.ac.za

Papers on our conference
2006: FireμSat: An Algorithm to Detect Microsatellites in DNA
 
Franca Rinaldi

Dipartimento di Matematica e Informatica
Via delle Scienze 206
33100 Udine
Italy
E-mail: rinaldi@dimi.uniud.it

Papers on our conference
2006: Flipping Letters to Minimize the Support of a String
 
Romeo Rizzi

Dipartimento di Matematica e Informatica
Via delle Scienze 206
33100 Udine
Italy
E-mail: rizzi@dimi.uniud.it

Papers on our conference
2006: Flipping Letters to Minimize the Support of a String
 
Wojciech Rytter

New Jersey Institute of Technology College of Computing Sciences
323 M.L.King Blvd. University Heights Newark
NJ 07102-1982, USA
E-mail: rytter@oak.njit.edu
WWW: ccs.njit.edu/people/fac_details.php?ucid=rytter

Papers on our conference
2004: A First Approach to Finding Common Motifs With Gaps
2008: Usefulness of Directed Acyclic Subword Graphs in Problems Related to Standard Sturmian Words
2009: Asymptotic Behaviour of the Maximal Number of Squares in Standard Sturmian Words
 
Martin Rýzl

Sun Microsystems Czech, s.r.o.
The Park, Building 3
V Parku 2308/8
148 00 Praha 4

 
Marie-France Sagot

BAOBAB Team
Inria Rhone-Alpes
Projet HELIX
UMR 5558 Biometrie et Biologie Evolutive
Université Claude Bernard Lyon 1
43, Bd du 11 Novembre 1918
69622 Villeurbanne cedex
France
E-mail: Marie-France.Sagot@inria.fr
WWW: http://www.inrialpes.fr/helix/people/sagot
phone: (+33) 472 448 238

Papers on our conference
2004: A First Approach to Finding Common Motifs With Gaps
2006: The Gapped-Factor Tree
 
Alejandro Salinger

Department of Computer Science
University of Chile
Blanco Encalada 2120
Santiago
Chile
E-mail: asalinge@dcc.uchile.cl

Papers on our conference
2005: A Simple Alphabet-Independent FM-Index
2006: FM-KZ: An Even Simpler Alphabet-Independent FM-Index
 
Mikaël Salson

LITIS EA 4108
Université de Rouen
76821 Mont Saint Aignan Cedex
France

Papers on our conference
2008: Dynamic Burrows-Wheeler Transform
 
Takashi Sato

Dept. Arts and Sciences (Computer Science)
Osaka Kyoiku University
4-698-1 Asahigaoka
Kashiwara, 582
Japan
E-mail: sato@cs.osaka-kyoiku.ac.jp

Papers on our conference
1996: Fast Full Text Search Using Tree Structured[TS] File
 
Agata Savary

Université François Rabelais de Tours
LI/Campus de Blois, France
3 place Jean Jaurés
41000 Blois, France
E-mail: agata.savary@univ-tours.fr

Papers on our conference
2005: Incremental String Correction: Towards Correction of XML Documents
 
Tamar C. Serebro

Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: t_lender@hotmail.com

Papers on our conference
2006: Modeling Delta Encoding of Compressed Files
 
Rifat Shahriyar

Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka, Bangladesh
E-mail: rifat@cse.buet.ac.bd

Papers on our conference
2009: Finding all covers of an indeterminate string in O(n) time on average
 
Dana Shapira

Department of Computer Science
Ashkelon Academic College
Ashkelon
Israel
E-mail: shapird@ash-college.ac.il

Papers on our conference
2005: Compressed Pattern Matching in JPEG Images
2006: Modeling Delta Encoding of Compressed Files
2008: Huffman Coding with Non-Sorted Frequencies
2009: On the Usefulness of Backspace
 
Fei Shi

Dept. Math and Computer Science
Suffolk University
Boston, MA 02114-428
USA
E-mail: Shi@cas.suffolk.edu

Papers on our conference
1999: Centroid Trees with Application to String Processing
 
Dong-Guk Shin

Dept. Computer Science and Engineering
The University of Connecticut
Storrs, CT 06269-3155
USA
E-mail: Shin@eng2.uconn.edu

Papers on our conference
1999: Centroid Trees with Application to String Processing
 
Ayumi Shinohara


Graduate School of Information Science
Tohoku University
Aramaki aza Aoba 6-6-05, Aoba-ku
Sendai 980-8579
Japan
E-mail: ayumi@ecei.tohoku.ac.jp
WWW: www.shino.ecei.tohoku.ac.jp/~ayumi/indexE.html

Papers on our conference
2001: Construction of the CDAWG for a Trie
2002: A Note on Randomized Algorithm for String Matching with Mismatches
2004: A Fully Compressed Pattern Matching Algorithm for Simple Collage Systems
2008: New Lower Bounds for the Maximum Number of Runs in a String
2008: Average Value of Sum of Exponents of Runs in Strings
2009: Bit-parallel algorithms for computing all the runs in a string
 
Masami Shishibori

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan
E-mail: bori@is.tokushima-u.ac.jp

Papers on our conference
1996: An Efficient Multi-Attribute Pattern Matching Machine
1997: An Efficient Trie Hashing Method Using a Compact Binary Trie
 
Jeong Seop Sim

Electronics and Telecommunications Research Institute
Daejeon
Korea
E-mail: simjs@etri.re.kr

Papers on our conference
2003: Approximate Seeds of Strings
 
Milan ©imánek


Sun Microsystems Czech, s.r.o.
The Park, Building 3
V Parku 2308/8
148 00 Praha 4
E-mail: Milan.Simanek@sun.com

Papers on our conference
1998: The Factor Automaton
2003: Operation L-INSERT on Factor Automaton
 
Tomá¹ Skopal


Department of Computer Science
Faculty of Electrical Engineering and Informatics
VSB-Technical University Ostrava
17. listopadu 15
708 33 Ostrava
Czech Republic
E-mail: tomas.skopal@vsb.cz
WWW: www.cs.vsb.cz/skopal/

Papers on our conference
2002: Image Recognition Using Finite Automata
 
Sebastian Smyczyński

Faculty of Mathematics and Computer Science
Nicolaus Copernicus University
Toruń, Poland
E-mail: smyczek@mat.umk.pl

Papers on our conference
2009: Constant-memory Iterative Generation of Special Strings Representing Binary Trees
 
William F. Smyth


Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: smyth@mcmaster.ca
WWW: www.cas.mcmaster.ca/~bill/cv.shtml
phone: 1-905-525-9140 ext. 23436

Papers on our conference
2000: Repetitions in two-pattern strings
2002: A Note on Crochemore's Repetitions Algorithm a Fast Space-Efficient Approach
2002: String Regularities with Don't Cares
2003: Computing the Minimum k-Cover of a String
2004: Sorting suffixes of two-pattern strings
2005: A Taxonomy of Suffix Array Construction Algorithms
2005: Reconstructing a Suffix Array
2006: Song Classifications for Dancing
2008: An Adaptive Hybrid Pattern-Matching Algorithm on Indeterminate Strings
2008: Fast Optimal Algorithms for Computing All the Repeats in a String
 
Václav Sná¹el

Department of Computer Science
Faculty of Electrical Engineering and Informatics
VSB-Technical University Ostrava
17. listopadu 15
708 33 Ostrava
Czech Republic
E-mail: Vaclav.Snasel@vsb.cz
WWW: www.cs.vsb.cz/snasel/

Papers on our conference
1997: Algebra of Pattern Matching Problems
1998: Approximate String Matching by Fuzzy Automata
2000: Word-based Compression Method with Direct Access
2002: Image Recognition Using Finite Automata
 
Jean-Marc Steyaert

Laboratoire d'Informatique (LIX)
Ecole Polytechnique
Palaiseau Cedex
France

E-mail: steyaert@lix.polytechnique.fr
WWW: www.lix.polytechnique.fr/Labo/Jean-Marc.Steyaert/
phone: +33 1 69 33 40 72

Papers on our conference
2003: The Transformation Distance Problem Revisited
 
Tinus Strauss

Department of Computer Science,
University of Pretoria
Pretoria 0002
Republic of South Africa
E-mail: tstrauss@cs.up.ac.za

Papers on our conference
2006: A Concurrent Specification of Brzozowski's DFA Construction Algorithm
2006: Efficient Automata Constructions and Approximate Automata
2008: A Concurrent Specification of an Incremental DFA Minimisation Algorithm
2009: On Minimizing Deterministic Tree Automata
 
Toru Sumitomo

Department of Information Science and Intelligent Systems
University of Tokushima
2-1 Minami-Josanjima-Cho
Tokushima-Shi 770-8506
Japan

Papers on our conference
1997: An Efficient Trie Hashing Method Using a Compact Binary Trie
 
Jan ©upol


WWW: cs.felk.cvut.cz/~supolj/

Papers on our conference
2004: Arithmetic Coding in Parallel
2006: 2D Bitwise Memory Matrix: A Tool for Optimal Parallel Approximate Pattern Matching
 
Masayuki Takeda


Department of Informatics
Kyushu University
744 Motooka, Nishiku, Fukuoka 812-8581
Japan
E-mail: takeda@i.kyushu-u.ac.jp
WWW: www.i.kyushu-u.ac.jp/~takeda/

Papers on our conference
2001: Construction of the CDAWG for a Trie
2002: A Note on Randomized Algorithm for String Matching with Mismatches
2004: A Fully Compressed Pattern Matching Algorithm for Simple Collage Systems
2006: Sparse Compact Directed Acyclic Word Graphs
2006: Reachability on Suffix Tree Graphs
2008: Parameterized Suffix Arrays for Binary Strings
 
Avraham N. Trahtman


Department of Computer Science
Bar-Ilan University
Ramat-Gan 52900
Israel
E-mail: trakht@macs.biu.ac.il
WWW: www.cs.biu.ac.il/~trakht/

Papers on our conference
2008: The Road Coloring and Èerny Conjecture
 
Zdenìk Troníèek


Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: tronicek@fel.cvut.cz
WWW: cs.felk.cvut.cz/~tronicek
WWW: cs.felk.cvut.cz/webis/people/tronicek.html
phone: (+420) 224 357 312

Papers on our conference
1998: Directed Acyclic Subsequence Graph
 
Athanasios K. Tsakalidis

Dept. of Computer Engineering and Informatics
Computer Technology Institute
University of Patras
Patras
Greece
E-mail: tsak@cti.gr

Papers on our conference
2002: String Regularities with Don't Cares
2003: Computing the Repetitions in a Weighted Sequence
 
Andrew Turpin

School of Computer Science & Information Technology
RMIT University
GPO Box 2476V
Melbourne, Victoria 3001
Australia
E-mail: aht@cs.rmit.edu.au
WWW: http://goanna.cs.rmit.edu.au/~aht/
phone: +61 3 9925 9675

Papers on our conference
2005: A Taxonomy of Suffix Array Construction Algorithms
 
Esko Ukkonen


Department of Computer Science
University of Helsinki
Finland
E-mail: ukkonen@cs.helsinki.fi
WWW: www.cs.helsinki.fi/u/ukkonen/
phone: +358-9-1914 4172

Papers on our conference
2003: Matching Numeric Strings under Noise
 
Ladislav Vagner


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Ladislav.Vagner@fit.cvut.cz
WWW: moon.felk.cvut.cz/~xvagner/
phone: (+420) 224 357 502

 
Gianluca Della Vedova

Dipartimento di Informatica
Sistemistica e Comunicazione
Universita degli Studi di Milano - Bicocca
20126 Milano
Italy
E-mail: dellavedova@disco.unimib.it

Papers on our conference
2000: Multiple Sequence Alignment as a Facility Location Problem
 
Michal Voráèek


Dept. of Comp. Sci. & Eng.
Faculty of Electrical Eng.
Czech Technical University in Prague
Prague
E-mail: voracem@fel.cvut.cz
WWW: cs.felk.cvut.cz/~voracem/
phone: (+420) 224 357 636

 
Shu Wang

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: shuw@mcmaster.ca

Papers on our conference
2008: An Adaptive Hybrid Pattern-Matching Algorithm on Indeterminate Strings
 
Bruce W. Watson


FASTAR
Finite Automata Systems – Theoretical and Applied Research group

Department of Computer Science,
University of Pretoria
Pretoria 0002
Republic of South Africa
E-mail: bruce@bruce-watson.com
WWW: www.bruce-watson.com

Papers on our conference
1996: A Collection of New Regular Grammar Pattern Matching Algorithms
1997: A New Family of String Pattern Matching Algorithms
1997: A Boyer-Moore (or Watson-Watson) Type Algorithm for Regular Tree Pattern Matching
1997: SPARE Parts: A C++ Toolkit for String PAttern REcognition
1998: An Early-Retirement Plan for the States
2000: A new family of Commentz-Walter-style multiple-keyword pattern matching algorithms
2003: Constructing Factor Oracles
2004: A Framework for the Dynamic Implementation of Finite Automata for Performance Enhancement
2005: Reordering Finite Automata States for Fast String Recognition
2006: A Concurrent Specification of Brzozowski's DFA Construction Algorithm
2006: Efficient Automata Constructions and Approximate Automata
2006: On Implementation and Performance of Table-Driven DFA-Based String Processors
2006: FireμSat: An Algorithm to Detect Microsatellites in DNA
2008: A Concurrent Specification of an Incremental DFA Minimisation Algorithm
2008: On Regular Expression Hashing to Reduce FA Size
2009: On Minimizing Deterministic Tree Automata
 
Richard E. Watson

Ribbit Software Systems Inc.
IST Technologies Research Group
Box 24040, 297 Bernard Ave., Kelowna
British Columbia, V1Y 9P9
Canada
E-mail: rwatson@ribbitsoft.com

Papers on our conference
1997: A New Family of String Pattern Matching Algorithms
1998: An Early-Retirement Plan for the States
 
Maik Weinard

Institut für Informatik
Johann Wolfgang Goethe-Universität Frankfurt am Main
Robert-Mayer-Straβe 11-15
60054 Frankfurt am Main
Germany
E-mail: weinard@thi.cs.uni-frankfurt.de

Papers on our conference
2004: Conditional Inequalities and the Shortest Common Superstring Problem
 
B. Westgeest

Department of Computer Science
Armstrong Atlantic State University
11935 Abercorn Street
Savannah, Georgia 31419
USA

Papers on our conference
2004: A Simple Lossless Compression Heuristic for Grey Scale Images
 
Geraint Wiggins


Department of Computing
School of Informatics
City University
London EC1V OHB
E-mail: geraint@soi.city.ac.uk
WWW: www.soi.city.ac.uk/~geraint/
phone: +44 20 7040 8848

 
Xiangdong Xiao

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada

Papers on our conference
2002: A Note on Crochemore's Repetitions Algorithm a Fast Space-Efficient Approach
 
Yasuhiro Yamada

Graduate School of Information Science and Electrical Engineering
Kyushu University
744 Motooka, Nishiku, Fukuoka 819-0395
Japan
E-mail: yshiro@cc.kyushu-u.ac.jp
WWW:
phone:

Papers on our conference
2003: An Efficient Mapping for Score of String Matching
 
Lu Yang

IBM Canada Limited
8200 Warden Avenue
Markham ON L6G 1C7
Canada
E-mail: luyang@ca.ibm.com

Papers on our conference
2003: Computing the Minimum k-Cover of a String
 
Qian Yang

Department of Computing & Software
Faculty of Engineering
McMaster University
Hamilton, Ontario
Canada L8S 4K1
E-mail: yangq6@univmail.cis.mcmaster.ca

Papers on our conference
2006: An Asymptotic Lower Bound for the Maximal-Number-of-Runs Function
 
Mao Yu

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: yum5@mcmaster.ca

Papers on our conference
2008: An Adaptive Hybrid Pattern-Matching Algorithm on Indeterminate Strings
 
Munina Yusufu

Algorithms Research Group
Department of Computing & Software
Faculty of Science
McMaster University
Hamilton, Ontario L8S 4L7
Canada
E-mail: yusufum@mcmaster.ca

Papers on our conference
2008: Fast Optimal Algorithms for Computing All the Repeats in a String
 
Jan ®ïárek


Department of Theoretical Computer Science
Faculty of Information Technology
Czech Technical University in Prague
Kolejní 550/2
160 00 Prague 6,
Czech Republic
E-mail: Jan.Zdarek@fit.cvut.cz
WWW: cs.felk.cvut.cz/webis/en/people/zdarekj.html
phone: (+420) 224 357 501

 
Gerard Zwaan


Department of Mathematics and Computer Science
Technische Universiteit Eindhoven
P.O. Box 513, NL-5600 MB Eindhoven
The Netherlands
E-mail: g.zwaan@tue.nl
WWW: www.win.tue.nl/medewerkers/homepages/g.zwaan.html
phone: 4291 (b.g.g. 5145)

Papers on our conference
2003: Constructing Factor Oracles
2005: A Missing Link in Root-to-Frontier Tree Pattern Matching
 
Lynette van Zijl

Department of Computer Science
Stellenbosch University,
South Africa
E-mail: lvzijl@sun.ac.za
WWW: http://www.cs.sun.ac.za/~lvzijl/

Papers on our conference
2009: Feature Extraction for Image Pattern Matching with Cellular Automata